<?xml version="1.0" encoding="utf-8" ?><rss version="2.0" xmlns:atom="http://www.w3.org/2005/Atom" xmlns:r="https://r-universe.dev"><channel><title>grkenney.r-universe.dev</title><link>https://grkenney.r-universe.dev</link><description>Recent package updates in grkenney</description><generator>R-universe</generator><image><url>https://github.com/grkenney.png</url><title>R packages by grkenney</title><link>https://grkenney.r-universe.dev</link></image><lastBuildDate>Sun, 17 May 2026 00:12:20 GMT</lastBuildDate><item><title>[bioc] SEMPLR 1.1.2</title><author>kenney.grace6@gmail.com (Grace Kenney)</author><description>SEMPLR computes transcription factor binding affinity
scores for genomic positions and genetic variants. Scores are
computed from SNP Effect Matrices (SEMs) produced by SEMpl. 223
pre-computed SEMs are included with the package or custom sets
can be provided. Enrichment can be tested among sets of genomic
positions to determine if transcription factor binding events
occur more often than expected. Comparing binding affinity
scores between alleles can reveal differences in transcription
factor binding with genetic variation. This package also
includes several visualization functions to view scores both on
the motif and variant/position level.</description><link>https://github.com/r-universe/bioc/actions/runs/37756232459</link><pubDate>Sun, 17 May 2026 00:12:20 GMT</pubDate><r:package>SEMPLR</r:package><r:version>1.1.2</r:version><r:status>success</r:status><r:repository>https://bioc.r-universe.dev</r:repository><r:upstream>https://github.com/bioc/SEMPLR</r:upstream><r:article><r:source>SEMPLR.Rmd</r:source><r:filename>SEMPLR.html</r:filename><r:title>SEMPLR Vignette</r:title><r:created>2026-02-02 23:34:15</r:created><r:modified>2026-05-16 23:53:17</r:modified></r:article></item></channel></rss>